miRBase entry: gmo-mir-129-3

Stem-loop gmo-mir-129-3


Accession
MI0036019
Description
Gadus morhua gmo-mir-129-3 precursor miRNA


Sequence

CUUUUUGCGGUCUGGGCUUGCugugaucgugaucuggAAGCCCUUACCCCAAAAAGCAU
(((((((.(((..((((((.(...(((....))).).))))))..))).)))))))...

Structure
---       C   CU      G ugu   c 
   CUUUUUG GGU  GGGCUU C   gau g
   ||||||| |||  |||||| |   |||  
   GAAAAAC CCA  CCCGAA g   cua u
UAC       C   UU      g --u   g 


Annotation confidence Not enough data
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Genome context
CAEA01481652.1: 75-133 [-]

Database links

Mature gmo-miR-129-3-5p

Accession MIMAT0044074
Description Gadus morhua gmo-miR-129-3-5p mature miRNA
Sequence 1 - CUUUUUGCGGUCUGGGCUUGC - 21
Evidence experimental
Illumina [2]

Mature gmo-miR-129-3p

Accession MIMAT0044075
Description Gadus morhua gmo-miR-129-3p mature miRNA
Sequence 38 - AAGCCCUUACCCCAAAAAGCAU - 59
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324