miRBase entry: gmo-let-7a-4

Stem-loop gmo-let-7a-4


Accession
MI0036027
Description
Gadus morhua gmo-let-7a-4 precursor miRNA

Literature search
1 open access papers mention gmo-let-7a-4
(2 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUugugggauggauugaauccuuauuuuggugauaaCUAUACAGUCUAGUGCCUUUCU
.((((((.((((((((((((((...(((((.......)))))............)))))))))))))).))))))...

Structure
--U      G              ---------ugu     gg 
   GAGGUA UAGGUUGUAUAGUU            gggau  a
   |||||| ||||||||||||||            |||||  u
   UUCCGU AUCUGACAUAUCaa            uccua  u
UCU      G              uagugguuuuau     ag 


Annotation confidence Not enough data
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Genome context
CAEA01553329.1: 497-574 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-let-7a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-let-7a-5p

Accession MIMAT0044081
Description Gadus morhua gmo-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-let-7a-4-3p

Accession MIMAT0044084
Description Gadus morhua gmo-let-7a-4-3p mature miRNA
Sequence 57 - CUAUACAGUCUAGUGCCUUUCU - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324