miRBase entry: gmo-mir-148

Stem-loop gmo-mir-148


Accession
MI0036030
Description
Gadus morhua gmo-mir-148 precursor miRNA


Sequence

AAGUUCUGUGAUACACUCAGACUguaauugacgguagUCAGUGCAUUACAGAACUUUG
((((((((((((.((((...(((((.....)))))....)))).))))))))))))..

Structure
--            A    -CAG     a 
  AAGUUCUGUGAU CACU    ACUgu a
  |||||||||||| ||||    ||||| u
  UUCAAGACAUUA GUGA    uggca u
GU            C    CUga     g 


Annotation confidence Not enough data
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Genome context
HE566826.1: 222664-222721 [-]

Database links

Mature gmo-miR-148-5p

Accession MIMAT0044086
Description Gadus morhua gmo-miR-148-5p mature miRNA
Sequence 1 - AAGUUCUGUGAUACACUCAGACU - 23
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-148-3p

Accession MIMAT0044087
Description Gadus morhua gmo-miR-148-3p mature miRNA
Sequence 38 - UCAGUGCAUUACAGAACUUUG - 58
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324