miRBase entry: gmo-mir-181c

Stem-loop gmo-mir-181c


Accession
MI0036033
Description
Gadus morhua gmo-mir-181c precursor miRNA


Sequence

CACAUUCAUCGCUGUCGGUGGGUUgagaauaaugcugucaacUUGCCGGACGCUGAAUGUCA
.(((((((.((...((((((((((((.(.......).)))))))))))).)).)))))))..

Structure
-C       U  CUG            g au 
  ACAUUCA CG   UCGGUGGGUUga a  a
  ||||||| ||   |||||||||||| |  a
  UGUAAGU GC   GGCCGUUcaacu u  u
AC       C  --A            g cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
HE566271.1: 312787-312848 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-181c-5p

Accession MIMAT0044091
Description Gadus morhua gmo-miR-181c-5p mature miRNA
Sequence 1 - CACAUUCAUCGCUGUCGGUGGGUU - 24
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-181c-3p

Accession MIMAT0044092
Description Gadus morhua gmo-miR-181c-3p mature miRNA
Sequence 43 - UUGCCGGACGCUGAAUGUCA - 62
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324