miRBase entry: gmo-mir-27a-2

Stem-loop gmo-mir-27a-2


Accession
MI0036042
Description
Gadus morhua gmo-mir-27a-2 precursor miRNA


Sequence

AGAGCUUAGCUAAUUGGUGAGCAuugaucccugcaauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure
--A           AUUG       uugauccc 
   GAGCUUAGCUA    GUGAGCA        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguaac 


Annotation confidence Not enough data
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Genome context
HE567057.1: 679133-679196 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gmo-mir-27a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-27a-5p

Accession MIMAT0044101
Description Gadus morhua gmo-miR-27a-5p mature miRNA
Sequence 1 - AGAGCUUAGCUAAUUGGUGAGCA - 23
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-27a-3p

Accession MIMAT0044102
Description Gadus morhua gmo-miR-27a-3p mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324