miRBase entry: gmo-mir-731

Stem-loop gmo-mir-731


Accession
MI0036051
Description
Gadus morhua gmo-mir-731 precursor miRNA


Sequence

AAUGACACGUUUUCUCCCGGAUUGcgaaacgcacgagcggcaaccgggaaucucgugucagcu
..(((((((.....((((((.((((....(((....)))))))))))))....)))))))...

Structure
-AA       UUUUC      A    gaaa   a 
   UGACACG     UCCCGG UUGc    cgc c
   |||||||     |||||| ||||    |||  
   acugugc     agggcc aacg    gcg g
ucg       -ucua      -    ----   a 


Annotation confidence Not enough data
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Genome context
HE571228.1: 149016-149078 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-731
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-731-5p

Accession MIMAT0044114
Description Gadus morhua gmo-miR-731-5p mature miRNA
Sequence 1 - AAUGACACGUUUUCUCCCGGAUUG - 24
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324