miRBase entry: gmo-mir-1788

Stem-loop gmo-mir-1788


Accession
MI0036058
Description
Gadus morhua gmo-mir-1788 precursor miRNA


Sequence

GGCUUGUUUUAAGUUGCCUGcgacuguauuugaacaCAGGCAGCUAAAGCAAGUCU
(((((((((((.((((((((....(((......)))))))))))))))))))))).

Structure
-           A        cgac   au 
 GGCUUGUUUUA GUUGCCUG    ugu  u
 ||||||||||| ||||||||    |||   
 CUGAACGAAAU CGACGGAC    aca  u
U           -        ----   ag 


Annotation confidence Not enough data
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Genome context
HE569150.1: 212358-212413 [-]

Database links

Mature gmo-miR-1788-5p

Accession MIMAT0044124
Description Gadus morhua gmo-miR-1788-5p mature miRNA
Sequence 1 - GGCUUGUUUUAAGUUGCCUG - 20
Evidence experimental
Illumina [2]

Mature gmo-miR-1788-3p

Accession MIMAT0044125
Description Gadus morhua gmo-miR-1788-3p mature miRNA
Sequence 37 - CAGGCAGCUAAAGCAAGUCU - 56
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324