miRBase entry: gmo-mir-29a-1

Stem-loop gmo-mir-29a-1


Accession
MI0036061
Description
Gadus morhua gmo-mir-29a-1 precursor miRNA


Sequence

ACUGAUUUCUUUCGGUGUUCAGagucuucuuguguuucUAGCACCAUUUGAAAUCGGUUA
(((((((((....((((((.((((.(.......).))))))))))....)))))))))..

Structure
--         UUUC      C    u uu 
  ACUGAUUUC    GGUGUU AGag c  c
  |||||||||    |||||| |||| |  u
  UGGCUAAAG    CCACGA Ucuu g  u
AU         UUUA      -    u ug 


Annotation confidence Not enough data
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Genome context
HE570301.1: 70280-70339 [-]

Database links

Mature gmo-miR-29a-3p

Accession MIMAT0044073
Description Gadus morhua gmo-miR-29a-3p mature miRNA
Sequence 39 - UAGCACCAUUUGAAAUCGGUUA - 60
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-29a-5p

Accession MIMAT0044129
Description Gadus morhua gmo-miR-29a-5p mature miRNA
Sequence 1 - ACUGAUUUCUUUCGGUGUUCAG - 22
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324