Stem-loop gmo-mir-30a

Accession

MI0036072

Description

Gadus morhua gmo-mir-30a precursor miRNA

Sequence

UGUAAACAUCCCCGACUGGAAGCUgucacucaguaaagCUUUCAGUCUGAUGUUUGCAC
((((((((((...(((((((((((............))))))))))).)))))))))).

Structure

-          CCC           gucac 
 UGUAAACAUC   GACUGGAAGCU     u
 ||||||||||   |||||||||||      
 ACGUUUGUAG   CUGACUUUCga     c
C          --U           aauga 

Annotation confidence Not enough data

Genome context

HE567919.1: 5897-5955 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-30a

Mature gmo-miR-30a-5p

• Accession: MIMAT0044144
• Description: Gadus morhua gmo-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCCCGACUGGAAGCU - 24
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-30a-3p

• Accession: MIMAT0044145
• Description: Gadus morhua gmo-miR-30a-3p mature miRNA
• Sequence: 39 - CUUUCAGUCUGAUGUUUGCAC - 59
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305