miRBase entry: gmo-mir-29d

Stem-loop gmo-mir-29d


Accession
MI0036075
Description
Gadus morhua gmo-mir-29d precursor miRNA


Sequence

CCGGUUUCAGGUGGUGUUUUAGAguaccagauccaaucUAGCACCAUUUGAAAUCGGU
(((((((((((((((((..((((.............))))))))))))))))))))).

Structure
-                 UU    guacc 
 CCGGUUUCAGGUGGUGU  UAGA     a
 |||||||||||||||||  ||||     g
 GGCUAAAGUUUACCACG  AUcu     a
U                 --    aaccu 


Annotation confidence Not enough data
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Genome context
HE569614.1: 926750-926807 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-29d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-29d-5p

Accession MIMAT0044149
Description Gadus morhua gmo-miR-29d-5p mature miRNA
Sequence 1 - CCGGUUUCAGGUGGUGUUUUAGA - 23
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-29d-3p

Accession MIMAT0044150
Description Gadus morhua gmo-miR-29d-3p mature miRNA
Sequence 39 - UAGCACCAUUUGAAAUCGGU - 58
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324