miRBase entry: gmo-mir-203b

Stem-loop gmo-mir-203b


Accession
MI0036086
Description
Gadus morhua gmo-mir-203b precursor miRNA


Sequence

AGUGGUUCUUAACAGUUCAACAguucauuuccaaaauuGUGAAAUGUUUAGGACCACUUA
(((((((((.((((.((((.(((((.........))))))))).)))).)))))))))..

Structure
--         U    G    A     cau 
  AGUGGUUCU AACA UUCA CAguu   u
  ||||||||| |||| |||| |||||   u
  UCACCAGGA UUGU AAGU Guuaa   c
AU         U    A    -     aac 


Annotation confidence Not enough data
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Genome context
HE571868.1: 1308404-1308463 [-]

Database links

Mature gmo-miR-203b-5p

Accession MIMAT0044162
Description Gadus morhua gmo-miR-203b-5p mature miRNA
Sequence 1 - AGUGGUUCUUAACAGUUCAACA - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-203b-3p

Accession MIMAT0044163
Description Gadus morhua gmo-miR-203b-3p mature miRNA
Sequence 39 - GUGAAAUGUUUAGGACCACUUA - 60
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324