miRBase entry: gmo-mir-11183

Stem-loop gmo-mir-11183


Accession
MI0036090
Description
Gadus morhua gmo-mir-11183 precursor miRNA


Sequence

ggCCCCAGGUAGAGCGCCUUCACCgcggacgcugAAGGAGCUCUACCUGGGGCCCA
(((((((((((((((.((((((.((....)).)))))).)))))))))))))))..

Structure
--               G      C  c 
  ggCCCCAGGUAGAGC CCUUCA Cg g
  ||||||||||||||| |||||| ||  
  CCGGGGUCCAUCUCG GGAAgu gc g
AC               A      c  a 


Annotation confidence Not enough data
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Genome context
HE567111.1: 1660946-1661001 [-]

Database links

Mature gmo-miR-11183-5p

Accession MIMAT0044169
Description Gadus morhua gmo-miR-11183-5p mature miRNA
Sequence 3 - CCCCAGGUAGAGCGCCUUCACC - 24
Evidence experimental
Illumina [2]

Mature gmo-miR-11183-3p

Accession MIMAT0044170
Description Gadus morhua gmo-miR-11183-3p mature miRNA
Sequence 35 - AAGGAGCUCUACCUGGGGCCCA - 56
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324