miRBase entry: gmo-mir-199-2

Stem-loop gmo-mir-199-2


Accession
MI0036108
Description
Gadus morhua gmo-mir-199-2 precursor miRNA


Sequence

CCCAGUGUUCAGACUACCUGUUcaucaggcugcgucugaACAGUAGUCUGCACAUUGGUUA
.(((((((.((((((((.(((...((((((...))))))))))))))))).)))))))...

Structure
--C       U        C   Uca      u 
   CCAGUGU CAGACUAC UGU   ucaggc  
   ||||||| |||||||| |||   |||||| g
   GGUUACA GUCUGAUG ACA   agucug  
AUU       C        -   ---      c 


Annotation confidence Not enough data
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Genome context
HE570789.1: 143297-143357 [+]

Database links

Mature gmo-miR-199-5p

Accession MIMAT0044025
Description Gadus morhua gmo-miR-199-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-199-3p

Accession MIMAT0044190
Description Gadus morhua gmo-miR-199-3p mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUUA - 61
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324