miRBase entry: gmo-mir-125a-2

Stem-loop gmo-mir-125a-2


Accession
MI0036113
Description
Gadus morhua gmo-mir-125a-2 precursor miRNA


Sequence

UCCCUGAGACCCUUAACCUGUGAgguuaaaggucacagguuagguccucgggaaca
..(((((((((..((((((((((.........))))))))))))).))))))....

Structure
--UC      -   CU          ggu 
    CCUGAG ACC  UAACCUGUGA   u
    |||||| |||  ||||||||||   a
    gggcuc ugg  auuggacacu   a
acaa      c   --          gga 


Annotation confidence Not enough data
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Genome context
HE566792.1: 123228-123283 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-125a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-125a-5p

Accession MIMAT0044194
Description Gadus morhua gmo-miR-125a-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUGA - 23
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324