miRBase entry: gmo-mir-129-1

Stem-loop gmo-mir-129-1


Accession
MI0036121
Description
Gadus morhua gmo-mir-129-1 precursor miRNA


Sequence

UCUUUUUGCGGUCUGGGCUUGCuguucauaacuaauaagcugggAAGCCCUUACCCCAAAAAGCAU
.(((((((.(((..((((((.(((((.((.....)).))).)).))))))..))).)))))))...

Structure
--U       C   CU      G  -   c  a 
   CUUUUUG GGU  GGGCUU Cu guu au a
   ||||||| |||  |||||| || ||| || c
   GAAAAAC CCA  CCCGAA gg cga ua u
UAC       C   UU      g  u   a  a 


Annotation confidence Not enough data
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Genome context
HE567269.1: 813253-813318 [-]

Database links

Mature gmo-miR-129-3p

Accession MIMAT0044075
Description Gadus morhua gmo-miR-129-3p mature miRNA
Sequence 45 - AAGCCCUUACCCCAAAAAGCAU - 66
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-129-5p

Accession MIMAT0044203
Description Gadus morhua gmo-miR-129-5p mature miRNA
Sequence 1 - UCUUUUUGCGGUCUGGGCUUGC - 22
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324