miRBase entry: gmo-mir-728b

Stem-loop gmo-mir-728b

Accession

MI0036137

Description

Gadus morhua gmo-mir-728b precursor miRNA

Sequence

aaauguaguagacuauaaguauacaugaaaaugcagggaguAUACUAAGUACACUAUGUUUA
(((((((((..(((...(((((((...............))))))).)))..))))))))).

Structure

-         ag   aua       augaaa 
 aaauguagu  acu   aguauac      a
 |||||||||  |||   |||||||      u
 UUUGUAUCA  UGA   UCAUAug      g
A         CA   --A       agggac

Annotation confidence Not enough data

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Genome context

HE571531.1: 324983-325044 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-728b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-728b-3p

Accession	MIMAT0044221
Description	Gadus morhua gmo-miR-728b-3p mature miRNA
Sequence	42 - AUACUAAGUACACUAUGUUUA - 62
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305