miRBase entry: gmo-mir-130b

Stem-loop gmo-mir-130b


Accession
MI0036143
Description
Gadus morhua gmo-mir-130b precursor miRNA

Literature search
1 open access papers mention gmo-mir-130b
(5 sentences)

Sequence

GCCCUUUUCCUCUUGCACUACUggacguugagaugagUAGUGCAAUAUUAAAAGGGCAU
((((((((....((((((((((.(.(.....).).))))))))))....))))))))..

Structure
--        CCUC          g a g 
  GCCCUUUU    UUGCACUACU g c u
  ||||||||    |||||||||| | | u
  CGGGAAAA    AACGUGAUga u g g
UA        UUAU          g a a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
HE566711.1: 727425-727483 [-]

Database links

Mature gmo-miR-130b-5p

Accession MIMAT0044229
Description Gadus morhua gmo-miR-130b-5p mature miRNA
Sequence 1 - GCCCUUUUCCUCUUGCACUACU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-130b-3p

Accession MIMAT0044230
Description Gadus morhua gmo-miR-130b-3p mature miRNA
Sequence 38 - UAGUGCAAUAUUAAAAGGGCAU - 59
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324