miRBase entry: gmo-mir-183

Stem-loop gmo-mir-183


Accession
MI0036163
Description
Gadus morhua gmo-mir-183 precursor miRNA


Sequence

UAUGGCACUGGUAGAAUUCACUgugaaagcacacuaucagUGAAUUACCAUAGGGCCAUAA
((((((..(((((..((((((((..(........)..)))))))))))))....)))))).

Structure
-      --AC     GA        ug aag 
 UAUGGC    UGGUA  AUUCACUg  a   c
 ||||||    |||||  ||||||||  |    
 AUACCG    ACCAU  UAAGUgac  u   a
A      GGAU     --        ua cac 


Annotation confidence Not enough data
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Genome context
HE567039.1: 12669-12729 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gmo-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-183-5p

Accession MIMAT0044261
Description Gadus morhua gmo-miR-183-5p mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-183-3p

Accession MIMAT0044262
Description Gadus morhua gmo-miR-183-3p mature miRNA
Sequence 41 - UGAAUUACCAUAGGGCCAUAA - 61
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324