miRBase entry: gmo-mir-15a

Stem-loop gmo-mir-15a


Accession
MI0036168
Description
Gadus morhua gmo-mir-15a precursor miRNA


Sequence

UAGCAGCACAGAAUGGUUUGUgguuacacugagauacaggccguacugugcugcag
..(((((((((.((((((((((............)))))))))).)))))))))..

Structure
UA         A          guuac 
  GCAGCACAG AUGGUUUGUg     a
  ||||||||| ||||||||||      
  cgucguguc ugccggacau     c
ga         a          agagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
HE571102.1: 46498-46553 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-15a-5p

Accession MIMAT0044267
Description Gadus morhua gmo-miR-15a-5p mature miRNA
Sequence 1 - UAGCAGCACAGAAUGGUUUGU - 21
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324