miRBase entry: gmo-mir-449a

Stem-loop gmo-mir-449a


Accession
MI0036185
Description
Gadus morhua gmo-mir-449a precursor miRNA

Literature search
1 open access papers mention gmo-mir-449a
(3 sentences)

Sequence

AGGCAGUGUCUUGUUAGCUGGUuuguuguguguuugcCAGCUUACCUGCUACUGCCCU
.(((((((.(..((.(((((((.............))))))).))..).)))))))..

Structure
-A       U UU  U       uuguu 
  GGCAGUG C  GU AGCUGGU     g
  ||||||| |  || |||||||     u
  CCGUCAU G  CA UCGACcg     g
UC       C UC  U       uuugu 


Annotation confidence Not enough data
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Genome context
HE566499.1: 61064-61121 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-449a-5p

Accession MIMAT0044285
Description Gadus morhua gmo-miR-449a-5p mature miRNA
Sequence 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-449a-3p

Accession MIMAT0044286
Description Gadus morhua gmo-miR-449a-3p mature miRNA
Sequence 38 - CAGCUUACCUGCUACUGCCCU - 58
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324