miRBase entry: gmo-mir-365

Stem-loop gmo-mir-365


Accession
MI0036188
Description
Gadus morhua gmo-mir-365 precursor miRNA


Sequence

AGGGACUUUUAGGGGCAGCUGUGuuuaauuaacccagucaUAAUGCCCCUAAAAAUCCUUAU
(((((.(((((((((((((((.(((.....))).)))).....))))))))))).)))))..

Structure
--     C           -----    U   u 
  AGGGA UUUUAGGGGCA     GCUG Guu a
  ||||| |||||||||||     |||| ||| a
  UUCCU AAAAUCCCCGU     ugac caa u
UA     A           AAUac    c   u 


Annotation confidence Not enough data
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Genome context
HE570758.1: 403785-403846 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-365
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-365-5p

Accession MIMAT0044290
Description Gadus morhua gmo-miR-365-5p mature miRNA
Sequence 1 - AGGGACUUUUAGGGGCAGCUGUG - 23
Evidence experimental
Illumina [2]

Mature gmo-miR-365-3p

Accession MIMAT0044291
Description Gadus morhua gmo-miR-365-3p mature miRNA
Sequence 41 - UAAUGCCCCUAAAAAUCCUUAU - 62
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324