miRBase entry: gmo-mir-140

Stem-loop gmo-mir-140


Accession
MI0036193
Description
Gadus morhua gmo-mir-140 precursor miRNA


Sequence

CAGUGGUUUUACCCUAUGGUAggugacgucaugcuguucuACCACAGGGUAGAACCACGGA
..(((((((((((((.((((((..((((......)))))))))).)))))))))))))...

Structure
-CA             A      gu    uc 
   GUGGUUUUACCCU UGGUAg  gacg  a
   ||||||||||||| ||||||  ||||   
   CACCAAGAUGGGA ACCAuc  uugu  u
AGG             C      --    cg 


Annotation confidence Not enough data
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Genome context
HE572041.1: 420054-420114 [+]

Database links

Mature gmo-miR-140-5p

Accession MIMAT0044299
Description Gadus morhua gmo-miR-140-5p mature miRNA
Sequence 1 - CAGUGGUUUUACCCUAUGGUA - 21
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-140-3p

Accession MIMAT0044300
Description Gadus morhua gmo-miR-140-3p mature miRNA
Sequence 41 - ACCACAGGGUAGAACCACGGA - 61
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324