miRBase entry: gmo-mir-138-2

Stem-loop gmo-mir-138-2


Accession
MI0036214
Description
Gadus morhua gmo-mir-138-2 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCcgcugaagagacacguacgGCUUUUUCACAACGCCAGGGU
..(((((((((((((..((((((...............)))))).)))))))))))))...

Structure
-AG             UC      cugaag 
   CUGGUGUUGUGAA  AGGCcg      a
   |||||||||||||  ||||||      g
   GACCGCAACACUU  UUCGgc      a
UGG             -U      augcac 


Annotation confidence Not enough data
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Genome context
HE571829.1: 202511-202571 [-]

Database links

Mature gmo-miR-138-5p

Accession MIMAT0044223
Description Gadus morhua gmo-miR-138-5p mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGC - 21
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-138-3p

Accession MIMAT0044320
Description Gadus morhua gmo-miR-138-3p mature miRNA
Sequence 41 - GCUUUUUCACAACGCCAGGGU - 61
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324