miRBase entry: gmo-mir-19b-1

Stem-loop gmo-mir-19b-1


Accession
MI0036219
Description
Gadus morhua gmo-mir-19b-1 precursor miRNA

Literature search
1 open access papers mention gmo-mir-19b-1
(4 sentences)

Sequence

AGUUUUGCUGGUUUGCUUUCAGcuuuugaaaacacacgcUGUGCAAAUCCAUGCAAAACUGA
((((((((((((((((...((((...((....))...)))).))))).))).))))))))..

Structure
--        -   -     UUU    uuu  a 
  AGUUUUGC UGG UUUGC   CAGc   ug a
  |||||||| ||| |||||   ||||   ||  
  UCAAAACG ACC AAACG   GUcg   ac a
AG        U   U     --U    cac  a 


Annotation confidence Not enough data
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Genome context
HE569758.1: 355452-355513 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from gmo-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-19b-3p

Accession MIMAT0044306
Description Gadus morhua gmo-miR-19b-3p mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAACUGA - 62
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-19b-5p

Accession MIMAT0044324
Description Gadus morhua gmo-miR-19b-5p mature miRNA
Sequence 1 - AGUUUUGCUGGUUUGCUUUCAG - 22
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324