miRBase entry: gmo-mir-27c

Stem-loop gmo-mir-27c


Accession
MI0036226
Description
Gadus morhua gmo-mir-27c precursor miRNA

Literature search
1 open access papers mention gmo-mir-27c
(7 sentences)

Sequence

AGGACUUAACACGCAUGUGAACAguguaaguguccuccgugUUCACAGUGGUUAAGUUCUG
((((((((((.(((.((((((((..(..........)..))))))))))))))))))))).

Structure
-          A   A        gu uaag 
 AGGACUUAAC CGC UGUGAACA  g    u
 |||||||||| ||| ||||||||  |     
 UCUUGAAUUG GUG ACACUUgu  c    g
G          -   -        gc uccu 


Annotation confidence Not enough data
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Genome context
HE567490.1: 4253-4313 [-]

Database links

Mature gmo-miR-27c-5p

Accession MIMAT0044332
Description Gadus morhua gmo-miR-27c-5p mature miRNA
Sequence 1 - AGGACUUAACACGCAUGUGAACA - 23
Evidence experimental
Illumina [2]

Mature gmo-miR-27c-3p

Accession MIMAT0044333
Description Gadus morhua gmo-miR-27c-3p mature miRNA
Sequence 42 - UUCACAGUGGUUAAGUUCUG - 61
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324