miRBase entry: gmo-mir-11205

Stem-loop gmo-mir-11205


Accession
MI0036256
Description
Gadus morhua gmo-mir-11205 precursor miRNA


Sequence

UCUCUCUGUUCUUUAUCAAUGuauugauuucaaagcaUUGAUUAUGUGUCAGGGAAACGG
..((((((......((((((((.(((....))).)))))))).......)))))).....

Structure
---UC      -UUCUUU        a   a 
     UCUCUG       AUCAAUGu uug u
     ||||||       |||||||| |||  
     AGGGAC       UAGUUacg aac u
GGCAA      UGUGUAU        a   u 


Annotation confidence Not enough data
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Genome context
CAEA01507227.1: 12-71 [-]

Database links

Mature gmo-miR-11205-5p

Accession MIMAT0044368
Description Gadus morhua gmo-miR-11205-5p mature miRNA
Sequence 1 - UCUCUCUGUUCUUUAUCAAUG - 21
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-11205-3p

Accession MIMAT0044369
Description Gadus morhua gmo-miR-11205-3p mature miRNA
Sequence 38 - UUGAUUAUGUGUCAGGGAAACGG - 60
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324