miRBase entry: gmo-mir-11211

Stem-loop gmo-mir-11211

Accession

MI0036263

Description

Gadus morhua gmo-mir-11211 precursor miRNA

Sequence

ggcggaacaaaguaccuucgagugugaaccugacaaCUUGGUACAUUUGUUGCUGACCU
((((((((((((((((...((((((.......)).))))))))).)))))).))).)).

Structure

-  -   -      -     uuc    -  ga 
 gg cgg aacaaa guacc   gagu gu  a
 || ||| |||||| |||||   |||| ||  c
 CC GUC UUGUUU CAUGG   UUCa ca  c
U  A   G      A     ---    a  gu

Annotation confidence Not enough data

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Genome context

HE566819.1: 131958-132016 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-11211

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-11211-3p

Accession	MIMAT0044377
Description	Gadus morhua gmo-miR-11211-3p mature miRNA
Sequence	37 - CUUGGUACAUUUGUUGCUGACCU - 59
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305