miRBase entry: gmo-mir-11213

Stem-loop gmo-mir-11213

Accession

MI0036265

Description

Gadus morhua gmo-mir-11213 precursor miRNA

Sequence

UAUGAACCUUGCACUGGAAGAaugguugaguuuugaguuuccuuccaugugacucgugucaga
(((((...(((((.((((((...(.((((...)))).)...))))))))))).))))).....

Structure

-----     ACC     C      Aau g    g 
     UAUGA   UUGCA UGGAAG   g uuga  
     |||||   ||||| ||||||   | |||| u
     gugcu   agugu accuuc   u aguu  
agacu     --c     -      cuu g    u

Annotation confidence Not enough data

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Genome context

HE571528.1: 75069-75131 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gmo-mir-11213

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-11213-5p

Accession	MIMAT0044379
Description	Gadus morhua gmo-miR-11213-5p mature miRNA
Sequence	1 - UAUGAACCUUGCACUGGAAGA - 21
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305