miRBase entry: gmo-mir-11221

Stem-loop gmo-mir-11221


Accession
MI0036275
Description
Gadus morhua gmo-mir-11221 precursor miRNA


Sequence

UAUUCUCACUGUAGGUUGGCGUCucauagucgugUCCCAAUCUAUCGUGCGAGUGU
(((((.(((.(((((((((.(.(.(......).).)))))))))).))).))))).

Structure
-     U   U         C U u au 
 UAUUC CAC GUAGGUUGG G C c  a
 ||||| ||| ||||||||| | | |   
 GUGAG GUG UAUCUAACC C g g  g
U     C   C         - U u cu 


Annotation confidence Not enough data
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Genome context
HE570340.1: 192148-192203 [+]

Database links

Mature gmo-miR-11221-5p

Accession MIMAT0044389
Description Gadus morhua gmo-miR-11221-5p mature miRNA
Sequence 1 - UAUUCUCACUGUAGGUUGGCGUC - 23
Evidence experimental
Illumina [2]

Mature gmo-miR-11221-3p

Accession MIMAT0044390
Description Gadus morhua gmo-miR-11221-3p mature miRNA
Sequence 35 - UCCCAAUCUAUCGUGCGAGUGU - 56
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324