miRBase entry: gmo-mir-11228

Stem-loop gmo-mir-11228


Accession
MI0036282
Description
Gadus morhua gmo-mir-11228 precursor miRNA


Sequence

ucauuuucacaccugauguauaugcaucaUCAGGUGUGAGAAUGAUUCGU
((((((((((((((((((.........)))))))))))))))))).....

Structure
-----                  uau 
     ucauuuucacaccugaug   a
     ||||||||||||||||||   u
     AGUAAGAGUGUGGACUac   g
UGCUU                  uac 


Annotation confidence Not enough data
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Genome context
HE567314.1: 566365-566414 [-]

Database links

Mature gmo-miR-11228-3p

Accession MIMAT0044398
Description Gadus morhua gmo-miR-11228-3p mature miRNA
Sequence 30 - UCAGGUGUGAGAAUGAUUCGU - 50
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324