Stem-loop gmo-mir-11235

Accession

MI0036290

Description

Gadus morhua gmo-mir-11235 precursor miRNA

Sequence

AUCGGUCUGCAGUUGAGAUAUUGUguguugacccccaaccgaaagguucuggcuuuaaaucacaauguccacagcauaccuga
...(((.(((.((.(.(((((((((..((((..((.((((....))))..))..))))..)))))))))))).))).)))...

Structure

AUC   C   A  U A         ug    cc  -c    g 
   GGU UGC GU G GAUAUUGUg  uuga  cc  aacc a
   ||| ||| || | |||||||||  ||||  ||  ||||  
   cca acg ca c cuguaacac  aauu  gg  uugg a
agu   u   a  - -         ua    uc  uc    a 

Annotation confidence Not enough data

Genome context

HE566193.1: 55031-55113 [+]

Mature gmo-miR-11235-5p

• Accession: MIMAT0044406
• Description: Gadus morhua gmo-miR-11235-5p mature miRNA
• Sequence: 1 - AUCGGUCUGCAGUUGAGAUAUUGU - 24
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305