Stem-loop gmo-mir-11242

Accession

MI0036300

Description

Gadus morhua gmo-mir-11242 precursor miRNA

Sequence

GAGGCUGGCAGAAGCCCUGGguggaggugagucguaagcagguaguguuggcuauggucugugggcugugucuggcccaa
(.((((((((..(((((.....(((....(((((...(((.....))))))))....)))..))))).)))).)))))..

Structure

-- A    -    GA     UGGgu   ggug     uaa   g 
  G GGCU GGCA  AGCCC     gga    agucg   gca g
  | |||| ||||  |||||     |||    |||||   ||| u
  c ccgg cugu  ucggg     ucu    ucggu   ugu a
aa -    u    -g     ---ug   ggua     ---   g 

Annotation confidence Not enough data

Genome context

HE569467.1: 611235-611314 [+]

Mature gmo-miR-11242-5p

• Accession: MIMAT0044419
• Description: Gadus morhua gmo-miR-11242-5p mature miRNA
• Sequence: 1 - GAGGCUGGCAGAAGCCCUGG - 20
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305