miRBase entry: gmo-mir-11268

Stem-loop gmo-mir-11268

Accession

MI0036329

Description

Gadus morhua gmo-mir-11268 precursor miRNA

Sequence

UCGGUACACUUGUGAUUGACCUCaugcaaaugcagcagugugugugucggacaugcgugcaugcgugugucuguuugugugcgu
...((((((....(((.(((..((((((..(((((((((.((.....)).)).))).)))))))))).))).))).))))))..

Structure

UCG      UUGU   U   CU      aa    -   -  g  u 
   GUACAC    GAU GAC  Caugca  ugca gca gu ug g
   ||||||    ||| |||  ||||||  |||| ||| || || u
   cgugug    uug cug  gugcgu  acgu cgu ca gc g
-ug      ---u   u   -u      --    g   a  g  u

Annotation confidence Not enough data

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Genome context

HE569363.1: 2581755-2581838 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gmo-mir-11268

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-11268-5p

Accession	MIMAT0044453
Description	Gadus morhua gmo-miR-11268-5p mature miRNA
Sequence	1 - UCGGUACACUUGUGAUUGACCUC - 23
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305