miRBase entry: fve-MIR156c

Stem-loop fve-MIR156c


Accession
MI0036352
Description
Fragaria vesca fve-MIR156c precursor miRNA


Sequence

ugUUGACAGAAGAGAGUGAGCACaaccccucauuggcgaaagagagcuuugucacuguugggagugugcucacucuucuucugucagca
((((((((((((((((((((((((..(((.((.(((((((.......))))))).))..)))..))))))))))).)))))))))))))

Structure
             -           ac   -u  u       ag 
ugUUGACAGAAGA GAGUGAGCACa  ccc  ca uggcgaa  a
||||||||||||| |||||||||||  |||  || |||||||  g
acgacugucuucu cucacucgugu  ggg  gu acuguuu  a
             u           ga   uu  c       cg 


Annotation confidence Not enough data
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Genome context
LG3: 5985819-5985907 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from fve-MIR156c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fve-miR156c

Accession MIMAT0044478
Description Fragaria vesca fve-miR156c mature miRNA
Sequence 3 - UUGACAGAAGAGAGUGAGCAC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610