miRBase entry: fve-MIR164c

Stem-loop fve-MIR164c


Accession
MI0036368
Description
Fragaria vesca fve-MIR164c precursor miRNA


Sequence

agggugaaugaaccaugcUGGAGAAGCAGGGCACAUGCUagauauaucagcaucaugaauaucgaucugagaauuucgcaugugcucuagcucuccaccuuggacucucucccu
((((.((..(..(((.(.((((((.(((((((((((((.((((...((((.(((.........)))))))..)))).))))))))))).)))))))).).))).)..)).))))

Structure
    u  au aa   u c      A  -           U    aua    c   aug 
aggg ga  g  cca g UGGAGA GC AGGGCACAUGC agau   ucag auc   a
|||| ||  |  ||| | |||||| || ||||||||||| ||||   |||| |||   a
uccc cu  c  ggu c accucu cg ucucguguacg uuua   aguc uag   u
    u  cu -a   u c      -  a           c    -ag    -   cua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
LG6: 27395980-27396093 [+]

Database links

Mature fve-miR164c

Accession MIMAT0044498
Description Fragaria vesca fve-miR164c mature miRNA
Sequence 19 - UGGAGAAGCAGGGCACAUGCU - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610