miRBase entry: fve-MIR171c

Stem-loop fve-MIR171c


Accession
MI0036390
Description
Fragaria vesca fve-MIR171c precursor miRNA


Sequence

gcugcuuuaacaugAGAUAUUGGUGCGGUUCAAUCagaaaccagcucuuugcucuuaaaguucuguuauuUGAUUGAGCCGUGCCAAUAUCacauauacagc
((((..(....(((.(((((((((((((((((((((((...(((..(((((....)))))..)))...))))))))))))))))))))))).))))..))))

Structure
    cu uaac   A                       aac   cu     c 
gcug  u    aug GAUAUUGGUGCGGUUCAAUCaga   cag  cuuug u
||||  |    ||| |||||||||||||||||||||||   |||  |||||  
cgac  a    uac CUAUAACCGUGCCGAGUUAGUuu   guc  gaaau c
    au ----   a                       auu   uu     u 


Annotation confidence Not enough data
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Genome context
LG3: 514668-514769 [-]

Database links

Mature fve-miR171c-5p

Accession MIMAT0044522
Description Fragaria vesca fve-miR171c-5p mature miRNA
Sequence 15 - AGAUAUUGGUGCGGUUCAAUC - 35
Evidence experimental
Illumina [1]

Mature fve-miR171c-3p

Accession MIMAT0044523
Description Fragaria vesca fve-miR171c-3p mature miRNA
Sequence 71 - UGAUUGAGCCGUGCCAAUAUC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610