miRBase entry: fve-MIR396b

Stem-loop fve-MIR396b


Accession
MI0036409
Description
Fragaria vesca fve-MIR396b precursor miRNA


Sequence

aaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUcaauucucugcuaacaaucuguaaucucuugcaagaguauuagcacaauguuugggaGCUCAAGAAAGCUGUGGGACAacaugacaacccaggauuu
((((((((((((((...(((((((((((((((((.(((((((....((((((...(((((((....)))).)))...))))))....)))..)))).)))))))))))))))))...)))))....)))))))))

Structure
         ----     cuu                 A    --   ucuc      caa   -    u 
aaguccugg    ucaug   UUCCACAGCUUUCUUGA CUUc  aau    ugcuaa   ucu guaa c
|||||||||    |||||   ||||||||||||||||| ||||  |||    ||||||   ||| ||||  
uuuaggacc    aguac   AGGGUGUCGAAAGAACU Gagg  uug    acgauu   aga cguu u
         caac     aAC                 C    gu   uaac      aug   a    c 


Annotation confidence Not enough data
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Genome context
LG1: 2526777-2526911 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from fve-MIR396b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fve-miR396b-5p

Accession MIMAT0044544
Description Fragaria vesca fve-miR396b-5p mature miRNA
Sequence 18 - UUCCACAGCUUUCUUGAACUU - 38
Evidence experimental
Illumina [1]

Mature fve-miR396b-3p

Accession MIMAT0044545
Description Fragaria vesca fve-miR396b-3p mature miRNA
Sequence 96 - GCUCAAGAAAGCUGUGGGACA - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610