miRBase entry: fve-MIR396a

Stem-loop fve-MIR396a


Accession
MI0036410
Description
Fragaria vesca fve-MIR396a precursor miRNA


Sequence

ugauccucuuuauaucuUUCCACAGCUUUCUUGAACUGcaucuagcauaagauaucugaucucugcaugcgGUUCAAUAAAGCUGUGGGAAGauacaaacagguuca
(((.(((.(((.(((((((((((((((((.(((((((((((...(((..((((.....)))).)))))))))))))).))))))))))))))))).))).))).)))

Structure
   u   c   a                 C           cua   ua    a 
uga ccu uuu uaucuUUCCACAGCUUU UUGAACUGcau   gca  agau u
||| ||| ||| ||||||||||||||||| |||||||||||   |||  |||| c
acu gga aaa auaGAAGGGUGUCGAAA AACUUGgcgua   cgu  ucua u
   u   c   c                 U           ---   -c    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
LG3: 1706973-1707079 [-]

Database links

Mature fve-miR396a-5p

Accession MIMAT0044546
Description Fragaria vesca fve-miR396a-5p mature miRNA
Sequence 18 - UUCCACAGCUUUCUUGAACUG - 38
Evidence experimental
Illumina [1]

Mature fve-miR396a-3p

Accession MIMAT0044547
Description Fragaria vesca fve-miR396a-3p mature miRNA
Sequence 72 - GUUCAAUAAAGCUGUGGGAAG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610