miRBase entry: fve-MIR11288c

Stem-loop fve-MIR11288c


Accession
MI0036431
Description
Fragaria vesca fve-MIR11288c precursor miRNA


Sequence

agaucuagcgucuucgaucagcgaUUCGUUCGGAUUCCAAUUCAAAcugaucgagcagucguuUGAAUUGGGAUUUGUCGAAUUgagggccgagaugaauagaucu
(((((((.(((((.((.((..(((((((..(((((((((((((((((.(((......)))))))))))))))))))).)))))))..)).)))))))..)))))))

Structure
       -g     u  a  ag       UU                 u   cg 
agaucua  cgucu cg uc  cgaUUCG  CGGAUUCCAAUUCAAAc gau  a
|||||||  ||||| || ||  |||||||  ||||||||||||||||| |||   
ucuagau  guaga gc gg  gUUAAGC  GUUUAGGGUUAAGUuug cug  g
       aa     -  c  ga       -U                 -   ac 


Annotation confidence Not enough data
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Genome context
LG3: 25353781-25353886 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from fve-MIR11288c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fve-miR11288c-5p

Accession MIMAT0044569
Description Fragaria vesca fve-miR11288c-5p mature miRNA
Sequence 25 - UUCGUUCGGAUUCCAAUUCAAA - 46
Evidence experimental
Illumina [1]

Mature fve-miR11288c-3p

Accession MIMAT0044570
Description Fragaria vesca fve-miR11288c-3p mature miRNA
Sequence 64 - UGAAUUGGGAUUUGUCGAAUU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26143249
    Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
    "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
    "Plant Physiol (2015) 169:594-610