miRBase entry: fve-MIR11288b

Stem-loop fve-MIR11288b

Accession

MI0036460

Description

Fragaria vesca fve-MIR11288b precursor miRNA

Sequence

ucggugacgucuuccgcaucaaaauuggccaccucccaauuaaaacuuagaguuugagaugcucaaauccuaguuugaacUGGGAUUGGGCGAAUUUUGGUcgagauuga
........((((..((.(((((((((.(((...(((((....(((((.((.(((((((...))))))).)))))))....)))))...))).)))))))))))))))...

Structure

ucggugac    uc  c         g   acc     auua     u  a       a 
        gucu  cg aucaaaauu gcc   uccca    aaacu ag guuugag  
        ||||  || ||||||||| |||   |||||    ||||| || ||||||| u
        uaga  gc UGGUUUUAA CGG   AGGGU    uuuga uc uaaacuc  
-----agu    --  -         G   GUU     caag     -  c       g

Annotation confidence Not enough data

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Genome context

LG3: 25352641-25352750 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fve-MIR11288b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature fve-miR11288b

Accession	MIMAT0044599
Description	Fragaria vesca fve-miR11288b mature miRNA
Sequence	81 - UGGGAUUGGGCGAAUUUUGGU - 101
Evidence	experimental Illumina [1]

References

PubMed ID: 26143249
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
"Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
"Plant Physiol (2015) 169:594-610