Stem-loop ppt-MIR11317

Accession

MI0036465

Description

Physcomitrella patens ppt-MIR11317 precursor miRNA

Sequence

caucuugaugaguuagugaccucacaacauaaccaauagcacaaacauuaaucucuaauccagcauaUCUGAUAUCAACUCCAGCUCUgaauauagugaagucacauuauauucgcuagauucagaguucgaguugguaucaaauacuuauaggaagaucuugucucucggauugcgaaagggagccccuguuuugucaacaaauagaaaccuaaggug
(((((((....(((.(((....)))))).........................((((((((....(((.((((((((((((.((((((((((.(((((((...........))))))).)))))))))).)))))))))))).)))...((((((...)))))).....)))))).)).((((...))))(((((...........))))).)))))))

Structure

       augaguuagugaccucacaacauaaccaauagcacaaacauuaauc  -      -------------------agca   C            C          a       guca 
caucuug                                              uc uaaucc                       uaU UGAUAUCAACUC AGCUCUgaau uagugaa    c
|||||||                                              || ||||||                       ||| |||||||||||| |||||||||| |||||||    a
guggaau                                              ag guuagg                       aua acuaugguugag uugagacuua aucgcuu    u
       ------------ccaaagauaaacaacuguuuuguccccgagggaa  c      cucucuguucuagaaggauauuc   a            c          g       auau 

Annotation confidence Not enough data

Genome context

Chr02: 12027076-12027294 [-]

Mature ppt-miR11317

• Accession: MIMAT0044604
• Description: Physcomitrella patens ppt-miR11317 mature miRNA
• Sequence: 68 - UCUGAUAUCAACUCCAGCUCU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162