Stem-loop ppt-MIR11321

Accession

MI0036469

Description

Physcomitrella patens ppt-MIR11321 precursor miRNA

Sequence

uaucuguuuucucaugugauuuucuuuugauauuaacuagggcuaaaucaucuggcuugaugugggauugguaaugcucccaagcaacuucaaaggcucaugagaugugcagaaacucggaacagcuuauguuucccucUCAUGUGCCUGUUGUAGUUCCccggaagcaaugucauauuaaggccuucaaacuucggcaguugagcaguguccccaagaaauaugguucacgugaaaugcaagaua
(((((((....((((((((.((((((..((((((((((...(((.........((((((((((((.((((.(.....(((...(.((((.(((((((.(((((((.((......))..((((((.....))))))..))))))).)))).))).)))))...)))).)))).))))))))).)))..........))))))))....)))))...))))))......))))))))...)).)))))

Structure

     -  uuuc        -----u      -uu     ----     agg   -aaaucaucu   -         g    g aaugc   caa c    u   -    u       ugugcagaaacuc      g 
uaucu gu    ucauguga      uuucuu   gauau    uaacu   gcu          ggc uugaugugg auug u     ucc   g aacu caa aggc caugaga             ggaaca c
||||| ||    ||||||||      ||||||   |||||    |||||   |||          ||| ||||||||| |||| |     |||   | |||| ||| |||| |||||||             |||||| u
auaga cg    agugcacu      aaagaa   cugug    guuga   cgg          ccg aauuauacu uaac a     agg   C UUGA GUU UCCG GUACUcu             cuuugu u
     a  -uaa        ugguau      ccc     acga     ---   cuucaaacuu   g         g    g -----   ccC -    U   G    U       -----------cc      a 

Annotation confidence Not enough data

Genome context

Chr07: 13023754-13023999 [-]

Mature ppt-miR11321

• Accession: MIMAT0044608
• Description: Physcomitrella patens ppt-miR11321 mature miRNA
• Sequence: 140 - UCAUGUGCCUGUUGUAGUUCC - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162