Stem-loop ppt-MIR11322

Accession

MI0036470

Description

Physcomitrella patens ppt-MIR11322 precursor miRNA

Sequence

aguagcacuauccgcugcaAGCACAGGGACAACGGAGUGUcuaggcucgcaaagugggcggagcaacgaagcagugugcuucguugaguugggcuugcucgcacuccguugucccugugcuuccgaggagaugcugcu
(((((((...(((..((.((((((((((((((((((((((.((((((((...(.(.(((((((((((......)).))))))))).).)))))))))...)))))))))))))))))))))).)).)))..)))))))

Structure

       cua   gc  c                      --c        caa g g         -  ga 
aguagca   ucc  ug aAGCACAGGGACAACGGAGUGU   uaggcucg   a u ggcggagca ac  a
|||||||   |||  || ||||||||||||||||||||||   ||||||||   | | ||||||||| ||   
ucgucgu   agg  gc uucgugucccuguugccucacg   guucgggu   u a uugcuucgu ug  g
       -ag   -a  c                      cuc        --- g g         g  ac 

Annotation confidence Not enough data

Genome context

Chr08: 3535299-3535436 [-]

Mature ppt-miR11322

• Accession: MIMAT0044609
• Description: Physcomitrella patens ppt-miR11322 mature miRNA
• Sequence: 20 - AGCACAGGGACAACGGAGUGU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162