Stem-loop ppt-MIR11323

Accession

MI0036471

Description

Physcomitrella patens ppt-MIR11323 precursor miRNA

Sequence

uuuugcugcugccaccauaaacugccuuaaaUUUGCAUUGCACACUAUAAUGcauuuuauauagcauuccuaagguacaccacaaucuuuaguguucuguaaaguacauuguggugugcaauguaaguucagaaaaacuugugguggcaugagcaaaa
.((((((..(((((((((((.........(((((((((((((((((((((((.((((((((.((((((...(((((........))))).)))))).)))))))).))))))))))))))))))))))).........)))))))))))..)))))).

Structure

u      gc           acugccuua                       c        u      ccu     aca 
 uuugcu  ugccaccauaa         aaUUUGCAUUGCACACUAUAAUG auuuuaua agcauu   aaggu   c
 ||||||  |||||||||||         ||||||||||||||||||||||| |||||||| ||||||   |||||    
 aaacga  acggugguguu         uugaauguaacgugugguguuac ugaaaugu uuguga   uucua   c
a      gu           caaaaagac                       a        c      --u     aca 

Annotation confidence Not enough data

Genome context

Chr08: 4825131-4825288 [-]

Mature ppt-miR11323

• Accession: MIMAT0044610
• Description: Physcomitrella patens ppt-miR11323 mature miRNA
• Sequence: 32 - UUUGCAUUGCACACUAUAAUG - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162