miRBase entry: ppt-MIR11325

Stem-loop ppt-MIR11325


Accession
MI0036473
Description
Physcomitrella patens ppt-MIR11325 precursor miRNA


Sequence

uagcaaauuuaugauaugaaauaucuacuauguuuuugucaaguugauugauuuggcacaucuaagauugguugggugucuucuaacaucaauuuuagacaUGCCAAAAUCAAUCAACUCGACaaucauauuuauaucuuacuguua
(((((.......((((((((........((((...(((((.(((((((((((((((((..((((((((((((((((.....))))))..))))))))))..)))).))))))))))))).))))).))))))))))))....)))))

Structure
     aauuuau        auaucuac    uuu     a             -    ca          --      u 
uagca       gauaugaa        uaug   uuguc aguugauugauuu ggca  ucuaagauug  guuggg g
|||||       ||||||||        ||||   ||||| ||||||||||||| ||||  ||||||||||  |||||| u
auugu       cuauauuu        auac   aaCAG UCAACUAACUAAA CCGU  agauuuuaac  caaucu c
     ---cauu        --------    --u     C             A    ac          ua      u 


Annotation confidence Not enough data
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Genome context
Chr14: 3915531-3915677 [+]

Database links

Mature ppt-miR11325

Accession MIMAT0044612
Description Physcomitrella patens ppt-miR11325 mature miRNA
Sequence 102 - UGCCAAAAUCAAUCAACUCGAC - 123
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26209555
    Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
    "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
    "Plant Cell (2015) 27:2148-2162