Stem-loop ppt-MIR11328

Accession

MI0036476

Description

Physcomitrella patens ppt-MIR11328 precursor miRNA

Sequence

ggcaagccaaggacgccgucuacaaggagcugcaguucacgaaaagugcgcuugaacaacuaucucgcuuggucgcaucuucagguacagaggcuucgagugggauugagaagguugauugcgcauggcuugagaagguugauccCACUCGAAGUCACUGUACCUGgagaagguccuugucuccacucacugugacugcucuugaaacaugaaggggguguuuagcagaggcuaaagcugguguugcc
(((((((((.((((...))))(((((((.((..(((.(((.....))).)))..............((......)).(((((((((((((.((((((((((((((((((.....((((..((.....)))))).....)))))))))))))))))).))))))))))))))).)))))))...(((.....)))(((.(((((........)))))))).((((((....))))))..)))).)))))

Structure

     -    ----------------------------------------------aggacgccgucu       g  gcaguucacgaaaagugcgcuugaacaacuaucucgcuuggucgca             a                  gaagg    uu  g 
ggcaa gcca                                                          acaagga cu                                              ucuucagguacag ggcuucgagugggauuga     uuga  gc c
||||| ||||                                                          ||||||| ||                                              ||||||||||||| ||||||||||||||||||     ||||  || a
ccguu uggu                                                          uguuccu ga                                              agagGUCCAUGUC CUGAAGCUCACccuaguu     aguu  cg u
     g    cgaaaucggagacgauuugugggggaaguacaaaguucucgucagugucacucaccuc       g  ----------------------------------------------             A                  ggaag    --  g 

Annotation confidence Not enough data

Genome context

Chr15: 15398874-15399121 [+]

Mature ppt-miR11328

• Accession: MIMAT0044615
• Description: Physcomitrella patens ppt-miR11328 mature miRNA
• Sequence: 146 - CACUCGAAGUCACUGUACCUG - 166
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162