Stem-loop ppt-MIR1027c

Accession

MI0036479

Description

Physcomitrella patens ppt-MIR1027c precursor miRNA

Sequence

cugaaguggaagagcaucUUUCUAUCUUCUCUUCCAAUCuauugaucugcucuuccaauacuaucagaucaauagauuggaagagcagaucgaaaaaugcucucaccuuaag
...(((.(..(((((((.((((.((((.(((((((((((((((((((((...............))))))))))))))))))))).)))).)))).)))))))..))))...

Structure

cug   u ga       c    U    U                     cucuuc 
   aag g  agagcau UUUC AUCU CUCUUCCAAUCuauugaucug      c
   ||| |  ||||||| |||| |||| |||||||||||||||||||||      a
   uuc c  ucucgua aaag uaga gagaagguuagauaacuagac      a
gaa   - ac       a    c    c                     uaucau 

Annotation confidence Not enough data

Genome context

Chr15: 5830285-5830396 [+]

Mature ppt-miR1027c

• Accession: MIMAT0044618
• Description: Physcomitrella patens ppt-miR1027c mature miRNA
• Sequence: 19 - UUUCUAUCUUCUCUUCCAAUC - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162