Stem-loop ppt-MIR1049b

Accession

MI0036481

Description

Physcomitrella patens ppt-MIR1049b precursor miRNA

Sequence

uggugacuacgcgaucagauggauugccuaagagagacgccucuacauggacagaucgucccuguaucgaugUCUCUCUUAGCCAAUCAUGCUcgucgcguagggcca
((((..(((((((((.((...(((((.((((((((((((.(..((((.((((.....)))).))))..).)))))))))))).)))))...)).))))))))).))))

Structure

    ga         c  aug     c            c uc    u    a 
uggu  cuacgcgau ag   gauug cuaagagagacg c  uaca ggac g
||||  ||||||||| ||   ||||| |||||||||||| |  |||| |||| a
accg  gaugcgcug UC   CUAAC GAUUCUCUCUgu g  augu ccug u
    -g         c  GUA     C            a cu    c    c 

Annotation confidence Not enough data

Genome context

Chr16: 5740797-5740904 [+]

Mature ppt-miR1049b

• Accession: MIMAT0044620
• Description: Physcomitrella patens ppt-miR1049b mature miRNA
• Sequence: 73 - UCUCUCUUAGCCAAUCAUGCU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162