miRBase entry: osa-MIR11340

Stem-loop osa-MIR11340


Accession
MI0036491
Description
Oryza sativa osa-MIR11340 precursor miRNA


Sequence

424 reads, 74 reads per million, 2 experiments
ccaucuaugcuuuaaauauaauuuucucuuaaacuacucAUCCGAUCUACGAUCCGAUUACACcguuguguucauaacaauuaaaucuuuacaacaagaucucacaugauuauauuuugguaaaaaaucacaaauuacuuuuauaauauaucuaaauuacuuuuagauuucacuaaguuacuucuuaaacauauaaaaguaaauucaauaaaguuuuaaaguaauuaacauauauuauagaaguuacuuucuuuuuguuuuuguuauaaguuacuucuauaguauaauguaaauuacuuuuaggcuuuauugaauuacuuuuauauaugucuaagaaguaacuuagugaaaucuaaaaguaguuuagauauauuauaaaaguaauuuauauuuuuucaucaaaauauaaucaugugagaucuuauuauaaagauuuaauuguuauaaacacAAUAGUGUAAUCGGAUUAUAGAUCggaugagcaguuuuagauaaaauuguauuugaaguauaggugga
(((((((((((((((((((((((((.(((.(((((.(((((((((((((.(((((((((((((.((((((((.((((((((((((((((((.((.(((((((((((((((((((((((((((((((((...((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((.(((((((((((((.(((((((((.(((((((((((((((((.((((..................)))).))))))))))))).)))).))))))))).))))))))))))))))))))..))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))..))))))).)))))))))))))))))))))))))).)).)))))))))))))))))).)))))))).))))))))))))).))))))))))))).))))).))).))))))))))))))))))))))))).

Structure
-                         c   u     a             C             c        c                  c  c                          -       cac                                                        a       --       a             u         a    -             u    ucuuuuug 
 ccaucuaugcuuuaaauauaauuuu ucu aaacu cucAUCCGAUCUA GAUCCGAUUACAC guuguguu auaacaauuaaaucuuua aa aagaucucacaugauuauauuuuggu aaaaaau   aaauuacuuuuauaauauaucuaaauuacuuuuagauuucacuaaguuacuucuua acauaua  aaaguaa uucaauaaaguuu aaaguaauu acau auauuauagaagu acuu        u
 ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||| ||||||||| |||| ||||||||||||| ||||         
 gguggauaugaaguuuauguuaaaa aga uuuga gaguaggCUAGAU UUAGGCUAAUGUG UAAcacaa uauuguuaauuuagaaau uu uucuagaguguacuaauauaaaacua uuuuuua   uuuaaugaaaauauuauauagauuugaugaaaaucuaaagugauucaaugaagaau uguauau  uuucauu aaguuauuucgga uuucauuaa ugua uaugauaucuuca ugaa        u
a                         u   u     c             A             A        a                  a  a                          c       -ua                                                        c       au       -             u         a    a             u    uauuguuu 


Annotation confidence Not enough data
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Genome context
Chr6: 7715008-7715526 [+]

Database links

Mature osa-miR11340-5p

Accession MIMAT0044634
Description Oryza sativa osa-miR11340-5p mature miRNA
Sequence 40 - AUCCGAUCUACGAUCCGAUUACAC - 63
Evidence experimental
Illumina [1]

Mature osa-miR11340-3p

Accession MIMAT0044635
Description Oryza sativa osa-miR11340-3p mature miRNA
Sequence 452 - AAUAGUGUAAUCGGAUUAUAGAUC - 475
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26083154
    MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
    "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
    "RNA Biol (2015) 12:847-863