Stem-loop osa-MIR11341

Accession

MI0036492

Description

Oryza sativa osa-MIR11341 precursor miRNA

Sequence

678 reads, 195 reads per million, 2 experiments

ucuuguuuggauccuccgggcuauuaaauagcccuccggaaucuugcuauuuaggauuauuaaacguagauuaccgacaaaaccgauuccauaaccCCUAGGCUAUUUUGCGAGACGAAUcuaaugauguauauuaauccauaauuagcggcugauuacuguagcaucacuguagcaaaucauggauuaauauAUCUCGUUAGAUUCGUCUCGCAAAauagccuagaaguuauggaauagguuuugucaguaaucuacguuuaauacucuuaaauagcaagauuccaaaggacuguuaaauagcccuucggauccaaacagggu
((((((((((((((...((((((((.(((((.(((..(((((((((((((((((((.(((((((((((((((((.(((((((((.((((((((((..((((((((((((((((((((((((((((((.((((((((((((((.(((.((.((((((.........))))..)).)).))).)))))))))))))).))))))))))))))))))))))))))))))..)))))))))).))))))))).))))))))))))))))).)))))))))))))))))))..))).))))).))))))))...)))))))))))))).

Structure

-              ucc        a     c   cc                   u                 c         g          cC                              u              a   a  g  --    uac 
 ucuuguuuggaucc   gggcuauu aauag ccu  ggaaucuugcuauuuagga uauuaaacguagauuac gacaaaacc auuccauaac  CUAGGCUAUUUUGCGAGACGAAUcuaauga guauauuaauccau auu gc gc  ugau   u
 ||||||||||||||   |||||||| ||||| |||  ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||| || ||  ||||   g
 gggacaaaccuagg   cccgauaa uuguc gga  ccuuagaacgauaaauucu auaauuugcaucuaaug cuguuuugg uaagguauug  gauccgauaAAACGCUCUGCUUAGAUUGCU UAuauaauuaggua uaa cg ug  acua   u
u              cuu        a     a   aa                   c                 a         a          aa                              C              c   a  a  uc    cga 

Annotation confidence Low

Genome context

Chr9: 22895036-22895359 [+]

Mature osa-miR11341-5p

• Accession: MIMAT0044636
• Description: Oryza sativa osa-miR11341-5p mature miRNA
• Sequence: 97 - CCUAGGCUAUUUUGCGAGACGAAU - 120
• Evidence: experimental ; Illumina [1]

Mature osa-miR11341-3p

• Accession: MIMAT0044637
• Description: Oryza sativa osa-miR11341-3p mature miRNA
• Sequence: 194 - AUCUCGUUAGAUUCGUCUCGCAAA - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26083154
   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
   "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
   "RNA Biol (2015) 12:847-863